This directory is configured with CORS. It contains the following files: * cigar-64k.fa.gz: three Oxford Nanopore reads extracted from the NA12878 ultra-long data set [1]. * cigar-64k.sam.gz: cigar-64k.fa.gz mapped to human genome hs37d5 with minimap2 r520. With command line: "minimap2 -ax map-ont hs37d5.fa cigar-64k.fa.gz", the second read will be aligned to chr13 with >65535 CIGAR operations. * cigar-64k.tag.sam.gz: mapped with command line (-L moves long-cigar to the CG tag): "minimap2 -ax map-ont -L hs37d5.fa cigar-64k.fa.gz" * cigar-64k.bam: converted from cigar-64k.sam.gz via long-cigar-aware samtools. Converting cigar-64k.tag.sam.gz to BAM would result in the same BAM. * cigar-64k.hg19.*: chromosome names manually modified to match hg19. For testing purpose. * samtools-1.6+CG_x64-linux.tar.bz2: samtools 1.6 plus long CIGAR support. * htsjdk-2.12.0-6-gddcdc5b-SNAPSHOT.jar: htsjdk 2.12.0 plus long CIGAR support. To test: java -cp htsjdk.jar htsjdk.samtools.example.PrintReadsExample cigar-64k.sam.gz true out.bam [1] https://github.com/nanopore-wgs-consortium/NA12878#rel4